STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lytR2Transcriptional regulator. (458 aa)    
Predicted Functional Partners:
sufR
Predicted transcriptional regulator.
  
    0.739
CVAR_3053
Two-component system response regulator.
   
  
 0.728
CVAR_2244
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
   
  
 0.691
lysG
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
   
  
 0.667
cobB
Hypothetical protein; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily.
  
    0.656
cobB-2
NAD-dependent protein deacetylases, SIR2 family; Belongs to the sirtuin family. Class III subfamily.
  
    0.656
CVAR_0422
Hypothetical protein; Transcriptional regulator.
   
    0.654
CVAR_2094
Hypothetical protein; Transcriptional regulator.
   
    0.642
lytR1
Transcriptional regulator.
 
   
0.601
CVAR_1270
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
   
  
 0.533
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.