STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_0405ABC-type polar amino acid transport system, ATPase component. (252 aa)    
Predicted Functional Partners:
CVAR_0404
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
  
 0.908
CVAR_0403
ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components.
 
  
 0.852
CVAR_1661
ABC transport system permease protein.
  
 0.754
tauC
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
 
  
 0.748
ntrB
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
  
 0.748
CVAR_0435
Hypothetical protein; ABC-type sugar transport systems, ATPase components.
  
     0.693
nrtA
ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components.
 
  
 0.690
CVAR_2650
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
  
 0.658
gcp
O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
  
   
 0.655
rplN
50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
  
    0.587
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.