STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_0422Hypothetical protein; Transcriptional regulator. (228 aa)    
Predicted Functional Partners:
CVAR_0419
Hypothetical protein; Predicted aminoglycoside phosphotransferase.
 
     0.793
fadE3
Acyl-CoA dehydrogenases.
  
    0.777
CVAR_0421
Hypothetical protein; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
       0.721
lytR2
Transcriptional regulator.
   
    0.654
mntR
Mn-dependent transcriptional regulator.
   
    0.654
lysG
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
   0.635
CVAR_0423
Hypothetical protein; Phosphoglycerate mutase 1; Belongs to the phosphoglycerate mutase family.
       0.614
CVAR_3055
TetR DNA-binding transcription regulator.
  
    0.565
CVAR_2244
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
   
   0.538
CVAR_1270
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
   
   0.512
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.