STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_0461Permeases of the major facilitator superfamily. (403 aa)    
Predicted Functional Partners:
CVAR_0460
ABC transport system permease protein.
       0.640
CVAR_3061
ABC transport system ATP-binding protein.
       0.640
CVAR_0949
Permeases of the major facilitator superfamily.
  
     0.545
CVAR_0459
Putative membrane protein.
  
    0.513
CVAR_1796
Putative membrane protein; Permeases of the major facilitator superfamily.
  
     0.505
CVAR_2624
Putative membrane protein; Permeases of the major facilitator superfamily.
  
     0.479
pknG
Serine/threonine protein kinase.
       0.441
CVAR_0458
Hypothetical protein; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
       0.441
CVAR_1999
Putative membrane protein; Permeases of the major facilitator superfamily.
  
     0.438
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.