STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rrf2Predicted transcriptional regulator. (176 aa)    
Predicted Functional Partners:
hmp
Nitric oxide dioxygenase; 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases; Belongs to the globin family.
 
   
 0.937
CVAR_1813
Hypothetical protein; Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes.
  
  
 0.789
CVAR_0497
Hypothetical protein; Acetyltransferases, including N-acetylases of ribosomal proteins.
       0.628
nifU
NifU homolog involved in Fe-S cluster formation.
  
  
 0.603
CVAR_2720
Hypothetical protein; Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
 
  
 0.460
CVAR_1018
Ferredoxin; Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
 
  
 0.457
CVAR_1022
Ferredoxin; Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
 
  
 0.453
panD1
Aspartate alpha-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
   
   0.451
CVAR_0494
Uncharacterized protein conserved in bacteria.
       0.449
CVAR_2045
Hypothetical protein; Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
 
  
 0.437
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.