STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ramALuxR DNA-binding transcription regulator; DNA-binding HTH domain-containing proteins. (281 aa)    
Predicted Functional Partners:
glxR
Crp-family transcription regulator; cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases.
   
 
 0.819
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
     
 0.772
CVAR_2885
Hypothetical protein.
 
   
 0.750
gabR1
DNA-binding transcription regulator; Regulator of polyketide synthase expression.
  
    0.636
CVAR_3008
Predicted integral membrane protein.
  
     0.625
CVAR_3062
Putative secreted protein.
  
    0.608
CVAR_2165
Hypothetical protein; Predicted hydrolase (HAD superfamily).
 
     0.602
CVAR_3050
Hypothetical protein.
       0.545
cysK1
Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.
     
 0.536
gabR2
DNA-binding transcription regulator; Regulator of polyketide synthase expression.
  
    0.532
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.