STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
adhA2Zn-dependent alcohol dehydrogenases. (372 aa)    
Predicted Functional Partners:
adhA4
Zn-dependent alcohol dehydrogenases.
  
  
0.926
adhA1
Zn-dependent alcohol dehydrogenases.
  
  
 
0.925
aldA
NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family.
 
 
 0.913
CVAR_0341
Hypothetical protein; NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family.
  
 
 0.913
alkB
Alkane 1-monooxygenase.
     
 0.910
CVAR_0789
Putative membrane protein; Cation transport ATPase.
 
 
 0.758
CVAR_0790
Putative oxidoreductase; Glycine/D-amino acid oxidases (deaminating).
     
 0.693
pta
Phosphate acetyltransferase; Phosphotransacetylase.
  
  
 0.664
CVAR_0792
Hypothetical protein.
       0.637
CVAR_1004
Hypothetical protein; Threonine dehydrogenase and related Zn- dependent dehydrogenases.
 
 
 0.562
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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