STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dctP2TRAP-type C4-dicarboxylate transport system, periplasmic component. (213 aa)    
Predicted Functional Partners:
dctT
TRAP-type C4-dicarboxylate transport system, large permease component.
 
  
 0.929
dctQ
TRAP dicarboxylate transporter subunit.
 
  
 0.914
dctP1
TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
     0.750
CVAR_0949
Permeases of the major facilitator superfamily.
       0.681
CVAR_2063
Predicted integral membrane protein.
   
 
 0.674
CVAR_0946
Transposase for insertion sequence element; Transposase and inactivated derivatives.
       0.567
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.