STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_0982Hypothetical protein; Predicted acetyltransferase. (124 aa)    
Predicted Functional Partners:
CVAR_0913
Folylpolyglutamate synthase.
      
 0.774
CVAR_0915
Putative membrane protein.
      
 0.774
valS
valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.
      
 0.683
CVAR_1112
Hypothetical protein; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  
    0.570
CVAR_1111
Hypothetical protein; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  
    0.555
CVAR_1881
Hypothetical protein; Predicted nucleoside-diphosphate-sugar epimerases.
  
    0.543
CVAR_2692
Hypothetical protein; Predicted nucleoside-diphosphate sugar epimerase.
  
    0.535
CVAR_0992
Pirin-related protein; Belongs to the pirin family.
 
    0.504
CVAR_1046
Hypothetical protein; Belongs to the UPF0337 (CsbD) family.
  
    0.482
CVAR_2401
Putative secreted protein.
  
    0.482
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.