STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_1020Ethanolamine utilization protein. (128 aa)    
Predicted Functional Partners:
CVAR_1022
Ferredoxin; Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
 
     0.904
CVAR_1019
Hypothetical protein.
 
     0.896
CVAR_1023
Hypothetical protein.
 
     0.896
CVAR_1021
Hypothetical protein.
       0.769
CVAR_1018
Ferredoxin; Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
 
     0.764
CVAR_1017
Hypothetical protein.
       0.553
CVAR_2613
Hypothetical protein.
  
     0.527
CVAR_2647
Ferredoxin; Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
 
     0.466
CVAR_0444
Putative secreted protein.
  
     0.451
CVAR_1014
tRNA 5-methylaminomethyl-2-thiouridine biosynthesis protein; Glycine/D-amino acid oxidases (deaminating).
 
     0.440
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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