STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
solA1Putative sarcosine oxidase; Glycine/D-amino acid oxidases (deaminating). (388 aa)    
Predicted Functional Partners:
CVAR_2042
Glycine cleavage system T protein (aminomethyltransferase); Belongs to the GcvT family.
 
 0.971
CVAR_1014
tRNA 5-methylaminomethyl-2-thiouridine biosynthesis protein; Glycine/D-amino acid oxidases (deaminating).
 
  
  0.950
solA2
Putative sarcosine oxidase; Glycine/D-amino acid oxidases (deaminating).
  
  
 
0.926
gcvP
Glycine cleavage system protein P (pyridoxal- binding), C-terminal domain; Belongs to the GcvP family.
  
 
 0.912
CVAR_2656
Glycine/D-amino acid oxidases (deaminating).
  
  
  0.911
glyA
Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
    
 0.909
CVAR_1035
Predicted ornithine cyclodeaminase, mu- crystallin homolog.
 
  
 0.861
CVAR_1033
Putative membrane protein; Amino acid transporters.
 
  
 0.850
fadH
NADH:flavin oxidoreductases, Old Yellow Enzyme family.
  
 
 0.620
CVAR_0392
Glycine cleavage system T protein (aminomethyltransferase).
  
 
 0.600
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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