STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aecDCystathionine beta-lyase; Aspartate/tyrosine/aromatic aminotransferase. (401 aa)    
Predicted Functional Partners:
metB
Cystathionine gamma-synthase; O-acetylhomoserine sulfhydrylase.
 
 
 0.965
metY
O-acetylhomoserine sulfhydrylase.
   
 0.931
cysK1
Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.
    
 0.911
metH
5-methyltetrahydrofolate- homocysteinemethyltransferase; Methionine synthase I, cobalamin-binding domain.
  
  
  0.911
cysK2
Cysteine synthase.
    
 0.911
CVAR_0603
Putative cysteine synthase/cystathionine beta-synthase; Cysteine synthase.
    
 0.909
metE1
5-methyltetrahydropteroyltriglutamate- homocysteine S-methyltransferase; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family.
    
 0.905
sseB1
Rhodanese-related sulfurtransferase.
    
  0.901
CVAR_0598
Hypothetical protein; Methionine synthase II (cobalamin-independent).
    
  0.901
metE2
5-methyltetrahydropteroyltriglutamate- homocysteine S-methyltransferase; Methionine synthase II (cobalamin-independent).
    
  0.901
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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