STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_1144Hypothetical protein; Exonuclease that cleaves single-stranded 3' overhangs of double-stranded RNA. (173 aa)    
Predicted Functional Partners:
CVAR_1622
Phage shock protein A (IM30), suppresses sigma54-dependent transcription.
  
     0.774
csm
Chorismate mutase.
  
     0.774
rsmP
Rod-shaped morphology protein; Phage shock protein A (IM30), suppresses sigma54-dependent transcription.
  
     0.774
CVAR_1143
Predicted membrane protein.
       0.773
CVAR_1488
Hypothetical protein.
  
     0.773
CVAR_1169
Cell division initiation protein.
  
     0.756
CVAR_0630
Hypothetical protein.
  
     0.744
CVAR_2219
Hypothetical protein.
  
     0.742
aroG
Phospho-2-dehydro-3-deoxyheptonate aldolase; 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; Belongs to the class-II DAHP synthase family.
     
 0.739
acnR
Transcriptional regulator.
  
     0.722
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.