STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_1194Hypothetical protein; DNA polymerase III, epsilon subunit and related 3'-5' exonucleases. (287 aa)    
Predicted Functional Partners:
CVAR_1496
Hypothetical protein; tRNA and rRNA cytosine-C5-methylases; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
 
 0.912
CVAR_1192
Uncharacterized protein conserved in bacteria.
 
     0.895
CVAR_1195
TetR DNA-binding transcription regulator.
       0.828
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 
 0.822
CVAR_1193
Hypothetical protein.
       0.805
CVAR_2148
Hypothetical protein; Superfamily I DNA and RNA helicases; Belongs to the helicase family. UvrD subfamily.
  
  
 0.783
CVAR_2149
Hypothetical protein; Superfamily I DNA and RNA helicases.
  
  
 0.783
dnaX
DNA polymerase III, gamma/tau subunits.
  
 
 0.721
leuS
Leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 
 0.694
CVAR_1196
Putative secreted protein.
       0.680
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.