STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_1226Uncharacterized membrane protein. (235 aa)    
Predicted Functional Partners:
CVAR_0748
Putative membrane protein.
 
  
 0.718
CVAR_1227
Predicted membrane protein.
       0.705
CVAR_0643
Putative membrane protein; Cation transport ATPase.
  
 
 0.595
CVAR_0789
Putative membrane protein; Cation transport ATPase.
  
 
 0.595
CVAR_0257
Putative membrane protein; DNA segregation ATPase FtsK/SpoIIIE and related proteins.
  
  
 0.544
CVAR_1228
Hypothetical protein.
       0.504
ligD
DNA ligase; Predicted eukaryotic-type DNA primase.
 
    0.440
gadB
Glutamate decarboxylase and related PLP- dependent proteins; Belongs to the group II decarboxylase family.
   
  
 0.438
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.