STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pbpB1Cell division protein FtsI/penicillin-binding protein 2. (586 aa)    
Predicted Functional Partners:
rodA
Bacterial cell division membrane protein; Belongs to the SEDS family.
 
 0.895
CVAR_2481
Putative secreted protein; Membrane carboxypeptidase (penicillin-binding protein).
 
 
 
 0.851
ftsW
Bacterial cell division membrane protein; Belongs to the SEDS family.
 
 
 0.830
pbpC
Membrane carboxypeptidase (penicillin-binding protein).
 
 
 
 0.797
ftsQ
Cell division protein; Essential cell division protein.
  
 
 0.711
CVAR_0212
Putative secreted protein.
 
   
 0.628
CVAR_0302
Hypothetical protein; Uncharacterized vancomycin resistance protein.
  
     0.611
CVAR_0490
Hypothetical protein; Type V secretory pathway, adhesin AidA.
  
     0.601
murE
UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.
 
  
 0.588
CVAR_0915
Putative membrane protein.
 
     0.572
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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