STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_1452Hypothetical protein. (286 aa)    
Predicted Functional Partners:
CVAR_1582
Hypothetical protein; DNA or RNA helicases of superfamily II.
 
     0.724
CVAR_1453
Hypothetical protein.
       0.684
CVAR_0004
Hypothetical protein; Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives.
  
     0.649
CVAR_0400
Hypothetical protein.
  
   
 0.618
holA
DNA polymerase III, delta subunit.
 
     0.608
CVAR_1862
Hypothetical protein; Predicted O-methyltransferase.
 
     0.605
CVAR_0612
Putative secreted protein; DNA or RNA helicases of superfamily II.
  
    0.543
CVAR_2729
Hypothetical protein; Fructose-2,6-bisphosphatase.
 
    0.494
whiB2
Putative WhiB transcription regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.488
clgR
HTH3 DNA-binding transcription regulator.
  
    0.484
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.