STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acnRTranscriptional regulator. (186 aa)    
Predicted Functional Partners:
acn
Aconitase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
  
    0.771
CVAR_1488
Hypothetical protein.
 
     0.764
CVAR_0805
Hypothetical protein.
  
     0.741
CVAR_3065
Hypothetical protein.
  
     0.741
CVAR_2150
Hypothetical protein; Predicted GTPase.
  
     0.735
CVAR_1144
Hypothetical protein; Exonuclease that cleaves single-stranded 3' overhangs of double-stranded RNA.
  
     0.722
CVAR_1622
Phage shock protein A (IM30), suppresses sigma54-dependent transcription.
  
    0.721
rsmP
Rod-shaped morphology protein; Phage shock protein A (IM30), suppresses sigma54-dependent transcription.
  
    0.721
CVAR_2421
Putative secreted protein.
  
     0.717
CVAR_0613
Hypothetical protein.
  
     0.716
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.