STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sufBABC-type transport system involved in Fe-S cluster assembly, permease component. (492 aa)    
Predicted Functional Partners:
CVAR_1465
ABC-type transport system involved in Fe-S cluster assembly ATP-binding protein; ABC-type oligopeptide transport system, ATPase component.
 
 0.999
sufS
Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 
 0.977
sufR
Predicted transcriptional regulator.
  
  
 0.966
nifU
NifU homolog involved in Fe-S cluster formation.
 
  
 0.947
sufD
Hypothetical protein.
 
   
0.915
CVAR_1462
Hypothetical protein; Predicted metal-sulfur cluster biosynthetic enzyme.
 
   
 0.869
CVAR_2905
Hypothetical protein; Selenocysteine lyase.
 
 
 0.831
mptB
Alpha 1,6 mannopyranosyltransferase.
     
 0.637
CVAR_1470
Hypothetical protein; ABC-type sugar transport systems, ATPase components.
       0.556
dnaK
Molecular chaperone; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
  
 0.491
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.