Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CVAR_3072 | betB | CVAR_3072 | CVAR_1535 | Hypothetical protein. | NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family. | 0.422 |
CVAR_3072 | betT1 | CVAR_3072 | CVAR_1536 | Hypothetical protein. | Choline-glycine betaine transporter; Belongs to the BCCT transporter (TC 2.A.15) family. | 0.481 |
CVAR_3072 | hisS | CVAR_3072 | CVAR_1537 | Hypothetical protein. | Histidyl-tRNA synthetase. | 0.836 |
betA1 | betB | CVAR_1534 | CVAR_1535 | Choline dehydrogenase and related flavoproteins. | NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family. | 0.991 |
betA1 | betT1 | CVAR_1534 | CVAR_1536 | Choline dehydrogenase and related flavoproteins. | Choline-glycine betaine transporter; Belongs to the BCCT transporter (TC 2.A.15) family. | 0.826 |
betA1 | hisS | CVAR_1534 | CVAR_1537 | Choline dehydrogenase and related flavoproteins. | Histidyl-tRNA synthetase. | 0.417 |
betA1 | proP | CVAR_1534 | CVAR_0041 | Choline dehydrogenase and related flavoproteins. | Proline/betaine transporter; Permeases of the major facilitator superfamily. | 0.441 |
betA2 | betB | CVAR_2684 | CVAR_1535 | Choline dehydrogenase and related flavoproteins. | NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family. | 0.668 |
betA2 | betT1 | CVAR_2684 | CVAR_1536 | Choline dehydrogenase and related flavoproteins. | Choline-glycine betaine transporter; Belongs to the BCCT transporter (TC 2.A.15) family. | 0.524 |
betA2 | proP | CVAR_2684 | CVAR_0041 | Choline dehydrogenase and related flavoproteins. | Proline/betaine transporter; Permeases of the major facilitator superfamily. | 0.441 |
betB | CVAR_3072 | CVAR_1535 | CVAR_3072 | NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family. | Hypothetical protein. | 0.422 |
betB | betA1 | CVAR_1535 | CVAR_1534 | NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family. | Choline dehydrogenase and related flavoproteins. | 0.991 |
betB | betA2 | CVAR_1535 | CVAR_2684 | NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family. | Choline dehydrogenase and related flavoproteins. | 0.668 |
betB | betT1 | CVAR_1535 | CVAR_1536 | NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family. | Choline-glycine betaine transporter; Belongs to the BCCT transporter (TC 2.A.15) family. | 0.795 |
betB | hisS | CVAR_1535 | CVAR_1537 | NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family. | Histidyl-tRNA synthetase. | 0.409 |
betB | proP | CVAR_1535 | CVAR_0041 | NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family. | Proline/betaine transporter; Permeases of the major facilitator superfamily. | 0.483 |
betT1 | CVAR_3072 | CVAR_1536 | CVAR_3072 | Choline-glycine betaine transporter; Belongs to the BCCT transporter (TC 2.A.15) family. | Hypothetical protein. | 0.481 |
betT1 | betA1 | CVAR_1536 | CVAR_1534 | Choline-glycine betaine transporter; Belongs to the BCCT transporter (TC 2.A.15) family. | Choline dehydrogenase and related flavoproteins. | 0.826 |
betT1 | betA2 | CVAR_1536 | CVAR_2684 | Choline-glycine betaine transporter; Belongs to the BCCT transporter (TC 2.A.15) family. | Choline dehydrogenase and related flavoproteins. | 0.524 |
betT1 | betB | CVAR_1536 | CVAR_1535 | Choline-glycine betaine transporter; Belongs to the BCCT transporter (TC 2.A.15) family. | NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family. | 0.795 |
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