STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_1557Phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. (221 aa)    
Predicted Functional Partners:
pgsA2
Phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
     
 0.959
CVAR_1556
Hypothetical protein; Lauroyl/myristoyl acyltransferase.
 
  
 0.947
cdsA
Phosphatidate cytidylyltransferase; CDP-diglyceride synthetase; Belongs to the CDS family.
    
 0.928
pimA
Glycosyltransferase.
 
  
 0.926
CVAR_1558
Hypothetical protein; Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases.
 
  
 0.913
CVAR_1989
Hypothetical protein; Phosphoserine phosphatase.
  
 
 0.906
thrS
Threonyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
  
 0.833
ino
Myo-inositol-1-phosphate synthase.
 
   
 0.782
CVAR_1554
Hypothetical protein.
       0.722
CVAR_1560
Putative secreted protein; Predicted iron-dependent peroxidase.
       0.639
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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