STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_1569Hypothetical protein. (223 aa)    
Predicted Functional Partners:
CVAR_1570
Ribonuclease D.
  
    0.912
CVAR_1566
Hypothetical protein.
 
     0.828
rbpA
Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.
  
     0.761
CVAR_1120
Hypothetical protein.
  
     0.751
holA
DNA polymerase III, delta subunit.
  
     0.738
CVAR_0004
Hypothetical protein; Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives.
  
     0.721
CVAR_1577
Hypothetical protein.
  
     0.719
CVAR_1862
Hypothetical protein; Predicted O-methyltransferase.
  
    0.717
lpqB
Putative secreted protein.
  
     0.711
CVAR_2139
Hypothetical protein.
  
     0.699
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.