STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_1583Hypothetical protein. (84 aa)    
Predicted Functional Partners:
rbpA
Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.
  
     0.695
CVAR_1120
Hypothetical protein.
  
     0.679
CVAR_1584
Hypothetical protein.
       0.664
CVAR_1582
Hypothetical protein; DNA or RNA helicases of superfamily II.
       0.652
CVAR_1150
Hypothetical protein; Acetyltransferases.
  
     0.648
opcA
Conserved hypothetical protein; Glucose-6-P dehydrogenase subunit.
  
     0.629
CVAR_0004
Hypothetical protein; Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives.
  
     0.625
CVAR_0570
Hypothetical protein.
  
     0.625
CVAR_1569
Hypothetical protein.
  
     0.623
CVAR_2180
Hypothetical protein.
  
     0.612
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.