STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gluBABC-type amino acid transport/signal transduction systems, periplasmic component/domain. (297 aa)    
Predicted Functional Partners:
gluC
ABC-type amino acid transport system, permease component.
 
 0.999
gluA
ABC-type polar amino acid transport system, ATPase component.
 
 0.997
gluD
ABC-type amino acid transport system, permease component.
 
 0.997
CVAR_1220
Hypothetical protein; ABC-type polar amino acid transport system, ATPase component.
 
 
 0.861
CVAR_1221
Putative membrane protein; ABC-type amino acid transport system, permease component.
 
 
 0.786
CVAR_1610
Putative membrane protein.
 
     0.715
miaB
Dimethylallyl adenosine tRNA methylthiotransferase; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
       0.671
CVAR_1222
Putative secreted protein; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
 
     0.583
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.