STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pbpB2Cell division protein FtsI/penicillin-binding protein 2. (627 aa)    
Predicted Functional Partners:
rodA
Bacterial cell division membrane protein; Belongs to the SEDS family.
 0.891
mapB
Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
     
 0.826
ftsW
Bacterial cell division membrane protein; Belongs to the SEDS family.
 
 
 0.801
CVAR_1691
Hypothetical protein.
       0.758
pbpC
Membrane carboxypeptidase (penicillin-binding protein).
 
 
 
 0.733
CVAR_1694
Putative membrane protein; Predicted membrane-associated Zn-dependent proteases 1.
  
  
 0.719
ftsQ
Cell division protein; Essential cell division protein.
  
 
 0.711
CVAR_2481
Putative secreted protein; Membrane carboxypeptidase (penicillin-binding protein).
 
 
 
0.689
CVAR_0407
Hypothetical protein.
  
     0.671
CVAR_0613
Hypothetical protein.
  
     0.667
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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