STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_1698Hypothetical protein; Uncharacterized integral membrane protein. (148 aa)    
Predicted Functional Partners:
rlmN
Hypothetical protein; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.
 
     0.717
CVAR_0956
Hypothetical protein.
 
     0.570
CVAR_2104
Putative membrane protein; Amino acid transporters.
  
     0.511
pcrA2
Superfamily I DNA and RNA helicases; Belongs to the helicase family. UvrD subfamily.
 
     0.494
CVAR_2692
Hypothetical protein; Predicted nucleoside-diphosphate sugar epimerase.
  
    0.487
CVAR_1082
Hypothetical protein; Beta-lactamase class C and other penicillin binding proteins.
  
     0.477
glfT
Predicted glycosyltransferases.
 
     0.474
CVAR_2065
Putative membrane protein.
  
     0.454
CVAR_1584
Hypothetical protein.
  
     0.447
CVAR_1265
Hypothetical protein; Predicted sugar phosphatases of the HAD superfamily.
   
    0.430
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.