STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_1756Hypothetical protein; Threonine dehydrogenase and related Zn- dependent dehydrogenases. (341 aa)    
Predicted Functional Partners:
alsD
Alpha-acetolactate decarboxylase.
     
 0.944
CVAR_1004
Hypothetical protein; Threonine dehydrogenase and related Zn- dependent dehydrogenases.
  
  
 
0.926
CVAR_1755
Putative endonuclease; Hydroxypyruvate isomerase.
  
    0.558
gltS
glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.
       0.542
CVAR_2406
8-amino-7-oxononanoate synthase; 7-keto-8-aminopelargonate synthetase and related enzymes.
  
  
 0.491
adhA1
Zn-dependent alcohol dehydrogenases.
 
 
0.451
adhA2
Zn-dependent alcohol dehydrogenases.
 
 
0.444
xylB
Xylulokinase; Glycerol kinase.
 
  
 0.414
adhA3
Zn-dependent alcohol dehydrogenases.
  
  
0.408
adhA4
Zn-dependent alcohol dehydrogenases.
 
 
0.407
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.