STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_1774Predicted iron-dependent peroxidase. (225 aa)    
Predicted Functional Partners:
CVAR_1773
Predicted iron-dependent peroxidase.
     0.993
CVAR_1772
Predicted periplasmic lipoprotein involved in iron transport.
 
  
 0.974
CVAR_1771
Hypothetical protein.
 
  
 0.969
CVAR_2599
Putative secreted protein; Uncharacterized protein conserved in bacteria.
 
    0.614
CVAR_1561
Putative secreted protein; Uncharacterized protein conserved in bacteria.
 
    0.600
CVAR_1562
Putative secreted protein; Uncharacterized protein, homolog of Cu resistance protein CopC.
  
  
 0.591
leuB
Isocitrate/isopropylmalate dehydrogenase.
       0.408
piuB
Uncharacterized iron-regulated membrane protein.
 
    0.403
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.