STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_1862Hypothetical protein; Predicted O-methyltransferase. (225 aa)    
Predicted Functional Partners:
CVAR_1863
Uncharacterized membrane-associated protein.
       0.739
CVAR_1569
Hypothetical protein.
  
    0.717
CVAR_0004
Hypothetical protein; Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives.
  
     0.676
sigE
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
       0.640
CVAR_1452
Hypothetical protein.
 
     0.605
CVAR_1860
Anti-sigma factor.
       0.592
scrB
Sucrose-6-phosphate hydrolase; Beta-fructosidases (levanase/invertase).
       0.590
tatB1
Sec-independent protein translocase protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation.
       0.544
holA
DNA polymerase III, delta subunit.
 
     0.537
CVAR_2729
Hypothetical protein; Fructose-2,6-bisphosphatase.
  
     0.537
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.