STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnhARibonuclease HI. (247 aa)    
Predicted Functional Partners:
pipB
Proline imino-peptidase; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
 
      0.818
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
      0.608
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
  
 
 0.603
uvrA3
UvrABC system protein A; Excinuclease ATPase subunit.
     
 0.582
mfsR
Transcriptional regulator.
       0.558
CVAR_1927
Putative membrane protein; Permeases of the major facilitator superfamily.
       0.532
ssb2
Single-stranded DNA-binding protein.
   
 
 0.442
CVAR_0835
Single-stranded DNA-binding protein.
   
 
 0.442
ssb1
Single-stranded DNA-binding protein.
   
 
 0.442
CVAR_1091
Zn-ribbon protein, possibly nucleic acid- binding.
  
  
 0.438
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.