STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_1959Transcriptional regulator. (200 aa)    
Predicted Functional Partners:
CVAR_1960
Putative membrane protein; Arabinose efflux permease.
 
     0.720
CVAR_1958
Transcriptional regulators.
       0.590
CVAR_1961
Putative membrane protein; Arabinose efflux permease.
 
     0.508
CVAR_1987
Transcriptional regulator.
  
     0.429
CVAR_1956
Putative membrane protein; Permeases of the major facilitator superfamily.
       0.427
CVAR_1957
Hypothetical protein; ABC-type Fe3+-hydroxamate transport system, periplasmic component.
       0.427
CVAR_1986
Pyridoxine 5-phosphate oxidase; Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase.
  
     0.421
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.