Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CVAR_1963Hypothetical protein; Esterase/lipase. (235 aa)    
Predicted Functional Partners:
CVAR_1962
Hypothetical protein; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
     
 0.804
CVAR_1964
Hypothetical protein.
       0.797
CVAR_1965
Hypothetical protein; Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin- dependent oxidoreductases.
       0.797
CVAR_1961
Putative membrane protein; Arabinose efflux permease.
       0.773
pks13
Polyketide synthase modules and related proteins.
  
 
 0.696
CVAR_1960
Putative membrane protein; Arabinose efflux permease.
       0.533
qcrA
Ubiquinol-cytochrome C reductase iron-sulfur protein.
   
   0.505
CVAR_1966
Hypothetical protein.
       0.496
CVAR_1083
Putative acyl carrier protein; Non-ribosomal peptide synthetase modules and related proteins.
   
 
 0.467
CVAR_0037
Hypothetical protein; Predicted nucleoside-diphosphate-sugar epimerases.
  
   0.423
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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