STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_2004Hypothetical protein; Restriction endonuclease. (195 aa)    
Predicted Functional Partners:
CVAR_2003
Hypothetical protein.
       0.773
CVAR_2002
Hypothetical protein.
       0.608
CVAR_3006
Hypothetical protein; Superfamily I DNA and RNA helicases and helicase subunits.
 
     0.543
dnaQ
DNA polymerase III, epsilon subunit and related 3'-5' exonucleases.
 
     0.538
tauR
Transcriptional regulator/sugar kinase.
  
     0.536
ruvC
Crossover junction endodeoxyribonuclease; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
     
 0.467
CVAR_0465
Hypothetical protein; Histone acetyltransferase HPA2 and related acetyltransferases.
  
     0.457
CVAR_2065
Putative membrane protein.
  
     0.450
CVAR_2001
Hypothetical protein.
       0.403
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.