Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_2004Hypothetical protein; Restriction endonuclease. (195 aa)    
Predicted Functional Partners:
CVAR_2003
Hypothetical protein.
       0.773
CVAR_2002
Hypothetical protein.
       0.608
CVAR_3006
Hypothetical protein; Superfamily I DNA and RNA helicases and helicase subunits.
 
     0.543
dnaQ
DNA polymerase III, epsilon subunit and related 3'-5' exonucleases.
  
     0.538
tauR
Transcriptional regulator/sugar kinase.
  
     0.536
CVAR_0465
Hypothetical protein; Histone acetyltransferase HPA2 and related acetyltransferases.
  
     0.457
CVAR_2065
Putative membrane protein.
  
     0.450
CVAR_2001
Hypothetical protein.
       0.403
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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