STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_2045Hypothetical protein; Flavodoxin reductases (ferredoxin-NADPH reductases) family 1. (426 aa)    
Predicted Functional Partners:
CVAR_2044
Hypothetical protein; Phenylpropionate dioxygenase and related ring- hydroxylating dioxygenases, large terminal subunit.
  
 0.969
fpr
NADPH-dependent glutamate synthase beta chain and related oxidoreductases.
   
 0.744
gltD
NADPH-dependent glutamate synthase beta chain and related oxidoreductases.
   
 0.744
sdaA
L-serine deaminase.
 
  
 0.742
narB
Nitrate reductase; Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
  
 
 0.721
CVAR_1813
Hypothetical protein; Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes.
  
 0.710
nifU
NifU homolog involved in Fe-S cluster formation.
  
 0.705
CVAR_2046
Hypothetical protein.
       0.699
hmp
Nitric oxide dioxygenase; 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases; Belongs to the globin family.
 
  
 0.675
trxB
Thioredoxin reductase.
   
 
 0.665
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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