STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_2046Hypothetical protein. (107 aa)    
Predicted Functional Partners:
sdaA
L-serine deaminase.
       0.776
CVAR_2044
Hypothetical protein; Phenylpropionate dioxygenase and related ring- hydroxylating dioxygenases, large terminal subunit.
 
   
 0.747
CVAR_2045
Hypothetical protein; Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
       0.699
CVAR_2583
Hypothetical protein.
  
    0.578
CVAR_1076
Hypothetical protein; Zn-dependent hydrolases, including glyoxylases.
  
    0.540
CVAR_1628
Hypothetical protein.
  
     0.468
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
    0.437
CVAR_2043
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
   
 0.407
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.