STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpfBResuscitation-promoting factor; Uncharacterized protein conserved in bacteria. (376 aa)    
Predicted Functional Partners:
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
  
 0.958
tatD
Deoxyribonuclease; Mg-dependent DNase.
     
 0.844
ispE
4-diphosphocytidyl-2-C-methyl-D- erythritolkinase; 4-diphosphocytidyl-2C-methyl-D-erythritol 2- phosphate synthase.
     
 0.814
CVAR_2049
Hypothetical protein; ATPase components of various ABC-type transport systems, contain duplicated ATPase.
     
 0.758
rpfI
Resuscitation-promoting factor interacting protein; Cell wall-associated hydrolases (invasion- associated proteins).
 
  
 0.647
CVAR_2188
Hypothetical protein.
  
     0.628
CVAR_2054
Hypothetical protein.
       0.609
cwlM
Putative hydrolase; N-acetylmuramoyl-L-alanine amidase.
 
  
 0.562
CVAR_2048
Predicted membrane protein.
       0.537
ctaC
Heme/copper-type cytochrome/quinol oxidases, subunit 2.
      
 0.520
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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