STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
betP3Choline-glycine betaine transporter; Belongs to the BCCT transporter (TC 2.A.15) family. (512 aa)    
Predicted Functional Partners:
rsmI
Hypothetical protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.768
CVAR_2059
Hypothetical protein; Choline-glycine betaine transporter.
       0.701
metG
Methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
       0.675
CVAR_2062
Putative membrane protein; Dolichyl-phosphate-mannose--protein O-mannosyl transferase.
       0.565
betA1
Choline dehydrogenase and related flavoproteins.
  
  
 0.528
betA2
Choline dehydrogenase and related flavoproteins.
  
  
 0.524
betB
NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family.
  
  
 0.462
proP
Proline/betaine transporter; Permeases of the major facilitator superfamily.
   
  
 0.440
betT3
Choline-glycine betaine transporter; Belongs to the BCCT transporter (TC 2.A.15) family.
  
   
0.411
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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