STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
citECitrate lyase beta subunit; Belongs to the HpcH/HpaI aldolase family. (292 aa)    
Predicted Functional Partners:
CVAR_2089
Hypothetical protein; Acyl dehydratase.
 
  
 0.985
CVAR_2092
Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).
 
  
 0.911
scoA
Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit.
     
 0.862
CVAR_2091
Acetyl/propionyl-CoA carboxylase, alpha subunit.
 
  
 0.847
scoB
Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit.
     
 0.844
CVAR_2090
Acyl-CoA dehydrogenases.
 
  
 0.841
fadD6
Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
     
 0.820
purD
Phosphoribosylamine-glycine ligase; Belongs to the GARS family.
     
 0.563
fadA4
Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
     
 0.543
CVAR_0775
Putative secreted protein; Ni,Fe-hydrogenase I cytochrome b subunit.
  
     0.507
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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