STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lpqBPutative secreted protein. (578 aa)    
Predicted Functional Partners:
mtrB
Two-component system sensor kinase; Signal transduction histidine kinase.
 
    0.811
CVAR_2169
Hypothetical protein; Predicted amidophosphoribosyltransferases.
 
     0.790
mtrA
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
     
 0.777
elrF
Envelope lipids regulation factor.
 
     0.767
embB
Arabinosyl transferase.
  
     0.764
aftC
Arabinofuranosyltransferase C.
  
     0.762
aftA
Arabinofuranosyltransferase A.
  
     0.718
CVAR_1569
Hypothetical protein.
  
     0.711
CVAR_2065
Putative membrane protein.
  
     0.708
CVAR_2104
Putative membrane protein; Amino acid transporters.
  
     0.708
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.