STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_2225Putative membrane protein; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components. (352 aa)    
Predicted Functional Partners:
CVAR_2224
Hypothetical protein; ABC-type sugar transport systems, ATPase components.
 
 0.996
CVAR_2226
Putative secreted protein; Transcriptional regulators.
 
 
 0.995
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
 0.688
lacI
Transcriptional regulators.
 
  
 0.628
ptsG
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific.
   
  
 0.612
CVAR_2223
Hypothetical protein.
       0.572
pknB2
Serine/threonine protein kinase.
       0.541
xylB
Xylulokinase; Glycerol kinase.
 
  
 0.461
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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