STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_2232ABC transport system permease protein / ATP-binding protein. (585 aa)    
Predicted Functional Partners:
CVAR_2231
Hypothetical protein; Transcriptional regulator.
 
   
 0.904
CVAR_2233
ABC-type multidrug transport system, ATPase and permease components.
 
    
0.842
CVAR_1357
Hypothetical protein; ABC-type sugar transport systems, ATPase components.
  
  0.645
nrpS2
Non-ribosomal peptide synthetase modules and related proteins.
 
  
 0.580
CVAR_2230
Hypothetical protein; ABC-type Fe3+-hydroxamate transport system, periplasmic component.
       0.559
dnaK
Molecular chaperone; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
 0.544
CVAR_2448
Transcriptional regulator.
  
   
 0.539
CVAR_2229
Transcriptional regulators containing a DNA- binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs.
       0.538
pks13
Polyketide synthase modules and related proteins.
  
 
 0.518
CVAR_0157
Hypothetical protein; ABC-type spermidine/putrescine transport systems, ATPase components.
  
  0.511
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.