STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_2242N-acetylmuramoyl-L-alanine amidase. (221 aa)    
Predicted Functional Partners:
cwlM
Putative hydrolase; N-acetylmuramoyl-L-alanine amidase.
    
 0.960
CVAR_0981
Putative secreted protein; N-acetylmuramoyl-L-alanine amidase.
     
  0.900
CVAR_3064
Putative membrane protein.
 
   0.633
CVAR_0057
Uncharacterized membrane protein (homolog of Drosophila rhomboid).
  
   0.581
sigD
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.571
ftsW
Bacterial cell division membrane protein; Belongs to the SEDS family.
  
  
 0.548
xerC
Tyrosine recombinase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
  
    0.504
CVAR_2038
Hypothetical protein.
  
     0.431
CVAR_1138
Putative secreted protein; Cell wall-associated hydrolases (invasion- associated proteins).
 
  
 0.423
CVAR_2273
Hypothetical protein; ATPases involved in chromosome partitioning.
  
    0.422
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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