STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_2304Transcriptional regulators. (249 aa)    
Predicted Functional Partners:
CVAR_2305
Hypothetical protein.
       0.712
CVAR_0604
Transcriptional regulators.
 
  
 0.702
CVAR_2306
Hypothetical protein; DNA segregation ATPase FtsK/SpoIIIE and related proteins.
  
    0.698
lldT
L-lactate permease; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
 
  
 0.630
CVAR_2303
Uncharacterized protein conserved in bacteria; Belongs to the WXG100 family.
       0.530
lysG
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
  
 0.518
CVAR_2302
Hypothetical protein; Belongs to the WXG100 family.
       0.447
dctT
TRAP-type C4-dicarboxylate transport system, large permease component.
 
     0.420
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.