STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_2504Putative membrane protein; Permeases of the drug/metabolite transporter (DMT) superfamily. (285 aa)    
Predicted Functional Partners:
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.720
CVAR_2509
Hypothetical protein; UDP-N-acetylmuramyl tripeptide synthase.
 
   
 0.706
CVAR_2885
Hypothetical protein.
  
 
 
 0.674
CVAR_2510
Hypothetical protein; Predicted glutamine amidotransferase.
 
     0.664
CVAR_2065
Putative membrane protein.
  
     0.630
CVAR_2772
Putative membrane protein.
 
  
 0.624
dnaQ
DNA polymerase III, epsilon subunit and related 3'-5' exonucleases.
 
 
   0.622
elrF
Envelope lipids regulation factor.
  
  
 0.619
CVAR_2744
Putative membrane protein; Type V secretory pathway, adhesin AidA.
  
     0.611
siuS9
Siderophore-binding protein; ABC-type Fe2+-enterobactin transport system, periplasmic component.
       0.610
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.