Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_2575Putative membrane protein. (100 aa)    
Predicted Functional Partners:
CVAR_2576
Putative membrane protein.
      
0.568
CVAR_2574
Hypothetical protein.
       0.460
xdhA
Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A.
       0.425
xdhB
Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs.
       0.425
xdhC
Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family.
       0.425
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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