STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_2611Transcriptional regulator. (273 aa)    
Predicted Functional Partners:
CVAR_2610
Putative NAD-dependent epimerase/dehydratase; Nucleoside-diphosphate-sugar epimerases.
 
     0.898
CVAR_0956
Hypothetical protein.
  
     0.552
CVAR_0024
Hypothetical protein.
  
     0.500
CVAR_2608
Hypothetical protein.
       0.491
CVAR_2609
Putative membrane protein.
       0.491
CVAR_0028
Uncharacterized protein conserved in bacteria.
 
    0.482
pcrA2
Superfamily I DNA and RNA helicases; Belongs to the helicase family. UvrD subfamily.
  
     0.445
CVAR_2612
Hypothetical protein; Predicted permease, DMT superfamily.
       0.411
CVAR_2613
Hypothetical protein.
       0.408
CVAR_0400
Hypothetical protein.
  
     0.402
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.