STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
codACytosine deaminase and related metal-dependent hydrolases. (440 aa)    
Predicted Functional Partners:
CVAR_2653
Creatinine amidohydrolase; Uncharacterized protein, putative amidase.
 
  
  0.984
upp
Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.
  
 
 0.918
deoD
Purine-nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.
  
 
 0.911
deoA
Thymidine phosphorylase.
    
 0.909
pyrR
PyrR DNA-binding transcription regulator; Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant.
    
 0.902
CVAR_2651
ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components.
 
     0.893
CVAR_2652
FAD/FMN-containing dehydrogenases.
 
     0.860
CVAR_2650
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
 
    0.854
CVAR_2649
ABC-type sugar transport systems, ATPase components.
 
     0.807
CVAR_2646
Hypothetical protein; Cytosine deaminase and related metal-dependent hydrolases.
 
     0.696
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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