STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdxHPyridoxine/pyridoxamine 5-phosphate oxidase; Pyridoxamine-phosphate oxidase. (218 aa)    
Predicted Functional Partners:
pdxT
Amidotransferase involved in pyridoxine biosynthesis; Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS.
    
 0.950
pdxS
Pyridoxine biosynthesis protein; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family.
    
 0.944
CVAR_1324
Putative phosphomethylpyrimidine kinase; Hydroxymethylpyrimidine/phosphomethylpyrimidinekina se.
     
 0.906
CVAR_2653
Creatinine amidohydrolase; Uncharacterized protein, putative amidase.
 
     0.857
CVAR_2651
ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components.
 
     0.775
CVAR_2652
FAD/FMN-containing dehydrogenases.
 
     0.758
CVAR_2650
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
 
     0.650
CVAR_2649
ABC-type sugar transport systems, ATPase components.
 
     0.619
CVAR_2655
Putative amidohydrolase; Cytosine deaminase and related metal-dependent hydrolases.
 
     0.617
codA
Cytosine deaminase and related metal-dependent hydrolases.
 
     0.601
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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