STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_2671ABC transport system substrate-binding protein; Spermidine/putrescine-binding periplasmic protein. (385 aa)    
Predicted Functional Partners:
CVAR_2669
ABC-type spermidine/putrescine transport system, permease component II.
 
 0.999
CVAR_2670
ABC-type spermidine/putrescine transport system, permease component I.
 
 
 0.997
potA
ABC transport system ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
 
 0.997
CVAR_2668
Putative oxidoreductase; Glycine/D-amino acid oxidases (deaminating).
 
   
 0.847
CVAR_2673
Putative amidohydrolase; Predicted metal-dependent hydrolase with the TIM-barrel fold.
 
     0.767
CVAR_2674
Transcriptional regulators.
 
    0.641
CVAR_2675
Putative aminotransferase; Adenosylmethionine-8-amino-7- oxononanoateaminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.638
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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