STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_2730Hypothetical protein; ABC-type Fe3+-hydroxamate transport system, periplasmic component. (388 aa)    
Predicted Functional Partners:
fiuA5
ABC-type sugar transport systems, ATPase components.
 
   0.839
fiuA3
ABC-type sugar transport systems, ATPase components.
 
   0.803
fiuA1
ABC-type sugar transport systems, ATPase components.
 
   0.793
fiuA2
ABC-type sugar transport systems, ATPase components.
 
   0.790
siuS17
Iron-siderophore binding protein; ABC-type Fe3+-hydroxamate transport system, periplasmic component.
 
  
 0.734
CVAR_0034
Hypothetical protein; ABC-type Fe3+-hydroxamate transport system, periplasmic component.
  
     0.703
CVAR_2729
Hypothetical protein; Fructose-2,6-bisphosphatase.
       0.673
ccsX
Thiol-disulfide isomerase and thioredoxins.
       0.672
fiuP5
Iron ABC transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
    0.636
CVAR_2727
Cytochrome c biogenesis protein.
  
    0.610
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.